Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3142KEGG: csc:Csac_2637 hypothetical protein. (395 aa)    
Predicted Functional Partners:
Ccel_3141
Hypothetical protein.
       0.773
Ccel_3143
KEGG: aoe:Clos_1909 hypothetical protein.
       0.773
Ccel_3144
Hypothetical protein.
       0.773
Ccel_3145
KEGG: aoe:Clos_1910 hypothetical protein.
       0.757
Ccel_3138
Hypothetical protein.
       0.746
Ccel_3139
Hypothetical protein; KEGG: drm:Dred_0825 type II secretion system protein E.
       0.746
Ccel_3140
Hypothetical protein; KEGG: maq:Maqu_2336 septum site-determining protein MinD.
       0.746
Ccel_3137
Hypothetical protein.
       0.711
Ccel_3146
KEGG: aoe:Clos_1911 hypothetical protein.
       0.654
Ccel_3147
KEGG: csc:Csac_2619 hypothetical protein.
       0.654
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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