Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3150KEGG: efa:EF2316 hypothetical protein. (318 aa)    
Predicted Functional Partners:
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
  
    0.707
Ccel_3149
Hypothetical protein.
       0.661
Ccel_3151
Hypothetical protein.
       0.625
Ccel_2406
KEGG: cno:NT01CX_1598 hypothetical protein.
  
     0.607
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.599
Ccel_3180
Putative transcriptional regulator, TetR family; KEGG: ctc:CTC01854 transcriptional regulator.
  
     0.598
Ccel_3152
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: psb:Psyr_2825 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.589
Ccel_2991
KEGG: cbe:Cbei_1948 hypothetical protein.
  
     0.581
Ccel_1210
KEGG: mac:MA1194 hypothetical protein.
  
    0.576
Ccel_1213
PFAM: condensation domain protein; Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
    0.565
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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