Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3152PFAM: DNA methylase N-4/N-6 domain protein; KEGG: psb:Psyr_2825 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family. (359 aa)    
Predicted Functional Partners:
Ccel_3151
Hypothetical protein.
       0.608
Ccel_3150
KEGG: efa:EF2316 hypothetical protein.
 
     0.589
Ccel_3153
PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein.
       0.490
Ccel_3177
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: efa:EF2307 hypothetical protein.
 
   
 0.444
Ccel_3149
Hypothetical protein.
       0.434
Ccel_3154
KEGG: tpd:Teth39_0051 hypothetical protein.
       0.434
Ccel_2440
PFAM: Resolvase domain; Recombinase; KEGG: cdf:CD1905 site-specific recombinases.
 
     0.432
Ccel_2966
Hypothetical protein.
  
     0.400
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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