Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3153PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein. (762 aa)    
Predicted Functional Partners:
Ccel_3154
KEGG: tpd:Teth39_0051 hypothetical protein.
 
     0.932
Ccel_2738
PFAM: TRAG family protein; KEGG: hmo:HM1_0622 TraG/TraD family protein, putative.
  
  
 
0.906
Ccel_3127
KEGG: aoe:Clos_1879 hypothetical protein.
 
  
 0.808
Ccel_3128
KEGG: aoe:Clos_1880 hypothetical protein.
 
    0.791
Ccel_3161
PFAM: zinc finger CHC2-family protein; KEGG: aoe:Clos_1919 zinc finger CHC2-family protein.
 
     0.777
Ccel_3177
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: efa:EF2307 hypothetical protein.
 
  
 0.770
Ccel_3123
KEGG: hmo:HM1_0623 hypothetical protein.
 
   
 0.730
Ccel_2778
PFAM: SAF domain protein; KEGG: hmo:HM1_0585 hypothetical protein.
 
     0.708
Ccel_2780
KEGG: hmo:HM1_0583 hypothetical protein.
 
     0.705
Ccel_2774
KEGG: hmo:HM1_0589 hypothetical protein.
 
     0.677
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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