STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3154KEGG: tpd:Teth39_0051 hypothetical protein. (404 aa)    
Predicted Functional Partners:
Ccel_3153
PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein.
 
     0.933
Ccel_3127
KEGG: aoe:Clos_1879 hypothetical protein.
 
     0.784
Ccel_3128
KEGG: aoe:Clos_1880 hypothetical protein.
 
     0.783
Ccel_3161
PFAM: zinc finger CHC2-family protein; KEGG: aoe:Clos_1919 zinc finger CHC2-family protein.
 
     0.782
Ccel_2780
KEGG: hmo:HM1_0583 hypothetical protein.
 
     0.772
Ccel_3123
KEGG: hmo:HM1_0623 hypothetical protein.
  
     0.768
Ccel_2737
KEGG: hmo:HM1_0623 hypothetical protein.
 
     0.767
Ccel_2769
KEGG: dsy:DSY4556 hypothetical protein.
  
     0.767
Ccel_2771
KEGG: dsy:DSY4557 hypothetical protein.
  
     0.767
Ccel_2772
KEGG: hmo:HM1_0591 hypothetical protein.
  
     0.766
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.