Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3161PFAM: zinc finger CHC2-family protein; KEGG: aoe:Clos_1919 zinc finger CHC2-family protein. (340 aa)    
Predicted Functional Partners:
Ccel_3163
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aoe:Clos_1923 nuclease; Belongs to the ParB family.
 
     0.919
Ccel_3177
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: efa:EF2307 hypothetical protein.
 
   
 0.790
Ccel_3164
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: lrf:LAR_0100 chromosome partitioning protein ParA.
  
  
 0.781
Ccel_3153
PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein.
 
     0.777
Ccel_3154
KEGG: tpd:Teth39_0051 hypothetical protein.
 
     0.773
Ccel_3162
SMART: Ankyrin; KEGG: LOC586468; similar to ankyrin 2,3/unc44.
       0.773
Ccel_3127
KEGG: aoe:Clos_1879 hypothetical protein.
 
   
 0.768
Ccel_2778
PFAM: SAF domain protein; KEGG: hmo:HM1_0585 hypothetical protein.
 
     0.757
Ccel_2774
KEGG: hmo:HM1_0589 hypothetical protein.
  
     0.748
Ccel_2775
KEGG: hmo:HM1_0588 hypothetical protein.
 
     0.743
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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