STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3163TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aoe:Clos_1923 nuclease; Belongs to the ParB family. (352 aa)    
Predicted Functional Partners:
Ccel_3164
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: lrf:LAR_0100 chromosome partitioning protein ParA.
 
 
 0.972
Ccel_3161
PFAM: zinc finger CHC2-family protein; KEGG: aoe:Clos_1919 zinc finger CHC2-family protein.
 
     0.920
Ccel_0007
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_2377 chromosome segregation ATPase.
 
 
 0.873
Ccel_3162
SMART: Ankyrin; KEGG: LOC586468; similar to ankyrin 2,3/unc44.
       0.773
Ccel_3306
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sha:SH2634 hypothetical protein; Belongs to the ParB family.
  
     0.612
Ccel_3177
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: efa:EF2307 hypothetical protein.
 
    0.540
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.538
Ccel_3165
KEGG: lpc:LPC_0185 hypothetical protein.
       0.536
Ccel_3166
Hypothetical protein.
       0.536
Ccel_3153
PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein.
 
   
 0.491
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.