Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3166Hypothetical protein. (47 aa)    
Predicted Functional Partners:
Ccel_3165
KEGG: lpc:LPC_0185 hypothetical protein.
       0.773
Ccel_3167
PFAM: HNH endonuclease; KEGG: mhu:Mhun_1686 HNH endonuclease.
       0.618
Ccel_3168
Hypothetical protein.
       0.618
Ccel_3161
PFAM: zinc finger CHC2-family protein; KEGG: aoe:Clos_1919 zinc finger CHC2-family protein.
       0.536
Ccel_3162
SMART: Ankyrin; KEGG: LOC586468; similar to ankyrin 2,3/unc44.
       0.536
Ccel_3163
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aoe:Clos_1923 nuclease; Belongs to the ParB family.
       0.536
Ccel_3164
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: lrf:LAR_0100 chromosome partitioning protein ParA.
       0.536
Ccel_3169
Hypothetical protein.
       0.523
Ccel_3170
Hypothetical protein.
       0.438
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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