Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_3177PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: efa:EF2307 hypothetical protein. (2077 aa)    
Predicted Functional Partners:
Ccel_2722
PFAM: restriction modification system DNA specificity domain; KEGG: lsl:LSL_0915 type I restriction-modification system specificity subunit.
  
 
 0.874
Ccel_2724
PFAM: restriction modification system DNA specificity domain; KEGG: cbk:CLL_A2082 Sau1hsdS1.
  
 
 0.874
Ccel_2726
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.810
Ccel_3161
PFAM: zinc finger CHC2-family protein; KEGG: aoe:Clos_1919 zinc finger CHC2-family protein.
 
   
 0.790
Ccel_3153
PFAM: TRAG family protein; KEGG: aoe:Clos_1912 TraG family protein.
 
  
 0.770
Ccel_3176
Hypothetical protein.
       0.697
Ccel_3127
KEGG: aoe:Clos_1879 hypothetical protein.
 
     0.644
Ccel_3175
Hypothetical protein.
       0.641
Ccel_3174
Hypothetical protein.
       0.597
Ccel_3178
Hypothetical protein.
       0.584
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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