Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3202PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_1050 ABC transporter related. (405 aa)    
Predicted Functional Partners:
Ccel_3203
PFAM: transport system permease protein; ABC-3 protein; KEGG: fnu:FN1969 hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.994
Ccel_3204
PFAM: periplasmic binding protein; KEGG: csc:Csac_1048 periplasmic binding protein.
 
 
 0.992
Ccel_2662
PFAM: transport system permease protein; KEGG: dsy:DSY1763 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.726
Ccel_2661
PFAM: transport system permease protein; KEGG: dsy:DSY1762 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.582
Ccel_3413
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: cpy:Cphy_3489 ABC-3 protein.
 
   
 0.488
Ccel_2663
PFAM: periplasmic binding protein; KEGG: dsy:DSY1764 hypothetical protein.
 
  
 0.486
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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