STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3202PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_1050 ABC transporter related. (405 aa)    
Predicted Functional Partners:
Ccel_3203
PFAM: transport system permease protein; ABC-3 protein; KEGG: fnu:FN1969 hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.997
Ccel_3204
PFAM: periplasmic binding protein; KEGG: csc:Csac_1048 periplasmic binding protein.
 
 
 0.996
Ccel_2662
PFAM: transport system permease protein; KEGG: dsy:DSY1763 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.699
Ccel_2661
PFAM: transport system permease protein; KEGG: dsy:DSY1762 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.555
Ccel_2663
PFAM: periplasmic binding protein; KEGG: dsy:DSY1764 hypothetical protein.
 
  
 0.546
Ccel_1282
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cpy:Cphy_1379 precorrin-6x reductase.
  
  
 0.453
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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