Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3203PFAM: transport system permease protein; ABC-3 protein; KEGG: fnu:FN1969 hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (350 aa)    
Predicted Functional Partners:
Ccel_3202
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_1050 ABC transporter related.
 
 
 0.994
Ccel_3204
PFAM: periplasmic binding protein; KEGG: csc:Csac_1048 periplasmic binding protein.
 
 
 0.991
Ccel_3105
KEGG: cbe:Cbei_4440 hypothetical protein.
  
 
 0.855
Ccel_2661
PFAM: transport system permease protein; KEGG: dsy:DSY1762 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.755
Ccel_2660
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1761 hypothetical protein.
  
  
 0.742
Ccel_1278
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase.
  
  
 0.620
Ccel_2663
PFAM: periplasmic binding protein; KEGG: dsy:DSY1764 hypothetical protein.
  
  
 0.620
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
  
 0.483
Ccel_2662
PFAM: transport system permease protein; KEGG: dsy:DSY1763 hypothetical protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
0.468
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
  
 0.465
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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