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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3207PFAM: sulfatase; KEGG: cbb:CLD_1681 sulfatase family protein. (595 aa)    
Predicted Functional Partners:
Ccel_1807
PFAM: sulfatase; KEGG: cpy:Cphy_0635 sulfatase.
  
  
  0.955
Ccel_0371
PFAM: sulfatase; KEGG: cac:CAC2802 phosphoglycerol transferase.
  
  
 
0.929
Ccel_0034
PFAM: Glycosyltransferase 28 domain; Monogalactosyldiacylglycerol synthase; KEGG: cbl:CLK_3302 hypothetical protein.
  
 
 0.904
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.688
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.586
Ccel_0254
KEGG: cth:Cthe_2130 hypothetical protein.
  
     0.580
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
     0.568
Ccel_3206
KEGG: nth:Nther_0726 CapA domain protein.
       0.538
Ccel_3180
Putative transcriptional regulator, TetR family; KEGG: ctc:CTC01854 transcriptional regulator.
  
     0.534
Ccel_2145
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cth:Cthe_2944 periplasmic sensor signal transduction histidine kinase.
  
     0.508
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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