Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3209PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1030 TPR repeat-containing protein. (234 aa)    
Predicted Functional Partners:
Ccel_0705
KEGG: pdi:BDI_2301 pantothenate kinase.
  
 
   0.646
Ccel_0602
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: TPR Domain containing protein.
  
     0.605
Ccel_1637
Hypothetical protein; KEGG: cth:Cthe_0351 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.582
Ccel_0333
PFAM: glycosyl transferase family 2; KEGG: cth:Cthe_1788 glycosyl transferase family protein.
  
 
 0.564
Ccel_1988
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: cpo:COPRO5265_0045 chitin synthase.
  
 
 0.564
Ccel_0492
PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: cth:Cthe_0550 heat shock protein 90.
   
 0.548
Ccel_3208
KEGG: efa:EF2212 hypothetical protein.
       0.538
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.528
Ccel_1187
PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aoe:Clos_1403 TPR repeat-containing protein.
  
     0.515
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
 
 
   0.500
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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