Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3210PFAM: lipolytic protein G-D-S-L family; KEGG: lin:lin0634 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Ccel_3349
KEGG: ckl:CKL_2427 hypothetical protein.
  
 
   0.681
Ccel_2464
PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein.
  
    0.588
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
 
 0.583
Ccel_2463
PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein.
  
    0.578
Ccel_1519
KEGG: predicted protein.
  
 
 0.573
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
 
 0.557
Ccel_3211
PFAM: Domain of unknown function DUF1836; KEGG: spd:SPD_1294 hypothetical protein.
       0.534
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
 
   0.525
Ccel_0390
Hypothetical protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
 
     0.524
Ccel_1491
PFAM: type 3a cellulose-binding domain protein; Hyalin; KEGG: LOC587453; similar to hyalin.
  
 
   0.505
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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