Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3233PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ckl:CKL_0584 hypothetical protein. (201 aa)    
Predicted Functional Partners:
Ccel_3232
Hypothetical protein.
       0.531
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
  
    0.509
Ccel_2198
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: plu:plu4700 zinc-responsive transcriptional regulator.
 
     0.436
Ccel_1955
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: cth:Cthe_0606 DNA internalization-related competence protein ComEC/Rec2.
  
    0.412
Ccel_3234
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: nth:Nther_2579 methyl-accepting chemotaxis sensory transducer with cache sensor.
       0.408
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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