Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_3240Protein of unknown function DUF291; PFAM: Ricin B lectin; S-layer domain protein; Carbohydrate binding family 6; protein of unknown function DUF291; glycoside hydrolase family 43; KEGG: hmo:HM1_0142 hypothetical protein. (2073 aa)    
Predicted Functional Partners:
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.619
Ccel_1255
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bcl:ABC3371 alpha-L-arabinofuranosidase.
 
   
 0.598
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.571
Ccel_1236
Protein of unknown function DUF1680; PFAM: cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; protein of unknown function DUF1680; SMART: beta and gamma crystallin; KEGG: sus:Acid_1242 hypothetical protein.
 
     0.527
Ccel_1036
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
 
   
 0.520
Ccel_1221
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
 
   
 0.490
Ccel_3241
KEGG: psa:PST_0303 hypothetical protein.
       0.478
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
  
     0.477
Ccel_0278
PFAM: S-layer domain protein; KEGG: cth:Cthe_2613 S-layer-like domain-containing protein.
  
     0.475
Ccel_0997
PFAM: protein of unknown function DUF1680; KEGG: sus:Acid_1242 hypothetical protein.
 
     0.451
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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