Ccel_3241 protein (Ruminiclostridium cellulolyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Ccel_3241

KEGG: psa:PST_0303 hypothetical protein. (370 aa)

Predicted Functional Partners:

Ccel_3242

0.574

Ccel_3243

0.513

Ccel_3240

0.478

Ccel_3244

0.449

Ccel_3245

0.449

Your Current Organism:

Ruminiclostridium cellulolyticum

NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Ccel_3240	Ccel_3241	Protein of unknown function DUF291; PFAM: Ricin B lectin; S-layer domain protein; Carbohydrate binding family 6; protein of unknown function DUF291; glycoside hydrolase family 43; KEGG: hmo:HM1_0142 hypothetical protein.	KEGG: psa:PST_0303 hypothetical protein.	0.478
Ccel_3241	Ccel_3240	KEGG: psa:PST_0303 hypothetical protein.	Protein of unknown function DUF291; PFAM: Ricin B lectin; S-layer domain protein; Carbohydrate binding family 6; protein of unknown function DUF291; glycoside hydrolase family 43; KEGG: hmo:HM1_0142 hypothetical protein.	0.478
Ccel_3241	Ccel_3242	KEGG: psa:PST_0303 hypothetical protein.	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	0.574
Ccel_3241	Ccel_3243	KEGG: psa:PST_0303 hypothetical protein.	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	0.513
Ccel_3241	Ccel_3244	KEGG: psa:PST_0303 hypothetical protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	0.449
Ccel_3241	Ccel_3245	KEGG: psa:PST_0303 hypothetical protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.	0.449
Ccel_3242	Ccel_3241	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	KEGG: psa:PST_0303 hypothetical protein.	0.574
Ccel_3242	Ccel_3243	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	0.997
Ccel_3242	Ccel_3244	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	0.608
Ccel_3242	Ccel_3245	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.	0.636
Ccel_3243	Ccel_3241	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	KEGG: psa:PST_0303 hypothetical protein.	0.513
Ccel_3243	Ccel_3242	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	0.997
Ccel_3243	Ccel_3244	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	0.677
Ccel_3243	Ccel_3245	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.	0.713
Ccel_3244	Ccel_3241	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	KEGG: psa:PST_0303 hypothetical protein.	0.449
Ccel_3244	Ccel_3242	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	0.608
Ccel_3244	Ccel_3243	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: tex:Teth514_2202 kojibiose phosphorylase.	0.677
Ccel_3244	Ccel_3245	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0776 sugar ABC transporter permease.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.	0.971
Ccel_3245	Ccel_3241	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.	KEGG: psa:PST_0303 hypothetical protein.	0.449
Ccel_3245	Ccel_3242	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.	Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.	0.636