Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3254Hypothetical protein. (309 aa)    
Predicted Functional Partners:
Ccel_3255
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gme:Gmet_2019 Orn/DAP/Arg decarboxylase 2.
       0.623
Ccel_3253
KEGG: acyl carrier protein, mitochondrial precursor, putative; K03955 NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1.
       0.559
Ccel_3256
PFAM: phosphopantetheine-binding; KEGG: sat:SYN_01151 acyl carrier protein.
       0.559
Ccel_3257
KEGG: saq:Sare_0485 hypothetical protein.
       0.498
Ccel_3258
KEGG: dde:Dde_1603 hypothetical protein.
       0.498
Ccel_3252
PFAM: AMP-dependent synthetase and ligase; KEGG: hmo:HM1_0197 long-chain-fatty-acid-CoA ligase.
       0.494
Ccel_3251
KEGG: fth:FTH_0345 hypothetical protein.
       0.451
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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