Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3260PFAM: protein of unknown function DUF98; KEGG: btl:BALH_2115 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Ccel_3259
PFAM: aminotransferase class-III; KEGG: bca:BCE_4189 adenosylmethionine--8-amino-7-oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.640
Ccel_3257
KEGG: saq:Sare_0485 hypothetical protein.
       0.485
Ccel_3258
KEGG: dde:Dde_1603 hypothetical protein.
       0.485
Ccel_3256
PFAM: phosphopantetheine-binding; KEGG: sat:SYN_01151 acyl carrier protein.
       0.434
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
  
 0.416
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
       0.406
Ccel_3262
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1604 ABC transporter, ATP-binding protein.
       0.406
Ccel_3263
PFAM: transcription activator effector binding; KEGG: cdf:CD1605 hypothetical protein.
       0.406
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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