Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3261PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein. (249 aa)    
Predicted Functional Partners:
Ccel_3262
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1604 ABC transporter, ATP-binding protein.
 
  
 0.964
Ccel_3263
PFAM: transcription activator effector binding; KEGG: cdf:CD1605 hypothetical protein.
 
     0.944
Ccel_3264
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC family transcription regulator.
 
     0.872
Ccel_0967
PFAM: ABC-2 type transporter; KEGG: swd:Swoo_2004 ABC-2 type transporter.
  
  
  0.669
Ccel_0694
KEGG: mth:MTH933 hypothetical protein.
  
  
 0.590
Ccel_1055
PFAM: nitroreductase; KEGG: cbe:Cbei_0725 nitroreductase.
  
  
 0.590
Ccel_3427
PFAM: nitroreductase; KEGG: cth:Cthe_3037 nitroreductase.
  
  
 0.590
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
  
 0.588
Ccel_2159
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afl:Aflv_1573 ABC-type multidrug transport system, ATPase component.
 
  
 0.549
Ccel_0966
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfu:PF1011 daunorubicin resistance ATP-binding protein DrrA.
 
  
 0.540
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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