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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3262PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1604 ABC transporter, ATP-binding protein. (320 aa)    
Predicted Functional Partners:
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.964
Ccel_3263
PFAM: transcription activator effector binding; KEGG: cdf:CD1605 hypothetical protein.
 
     0.882
Ccel_3264
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC family transcription regulator.
 
     0.776
Ccel_0967
PFAM: ABC-2 type transporter; KEGG: swd:Swoo_2004 ABC-2 type transporter.
 
  
 0.595
Ccel_2157
Hypothetical protein; KEGG: afl:Aflv_1572 ABC-type multidrug transport system, permease component.
 
 
 0.586
Ccel_0223
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: blj:BLD_0790 ABC-type multidrug transport system ATPase component.
 
    
0.542
Ccel_0296
PFAM: ABC-2 type transporter; KEGG: cth:Cthe_2707 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.542
Ccel_1160
KEGG: hmo:HM1_1647 hypothetical protein.
  
 
 0.525
Ccel_3265
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.463
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.449
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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