Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3262PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1604 ABC transporter, ATP-binding protein. (320 aa)    
Predicted Functional Partners:
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.964
Ccel_3263
PFAM: transcription activator effector binding; KEGG: cdf:CD1605 hypothetical protein.
 
     0.882
Ccel_3264
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: cdf:CD1883 AraC family transcription regulator.
 
     0.776
Ccel_0967
PFAM: ABC-2 type transporter; KEGG: swd:Swoo_2004 ABC-2 type transporter.
 
  
 0.600
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
 
 
 0.556
Ccel_0223
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: blj:BLD_0790 ABC-type multidrug transport system ATPase component.
 
    
0.541
Ccel_1919
PFAM: regulatory protein GntR HTH; KEGG: cbt:CLH_0644 transcriptional regulator, GntR family.
  
    0.519
Ccel_2157
Hypothetical protein; KEGG: afl:Aflv_1572 ABC-type multidrug transport system, permease component.
 
 
 0.495
Ccel_3265
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.464
Ccel_0296
PFAM: ABC-2 type transporter; KEGG: cth:Cthe_2707 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.436
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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