Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3281KEGG: ljo:LJ0323 Lj965 prophage protein. (119 aa)    
Predicted Functional Partners:
Ccel_3280
Hypothetical protein; KEGG: cpf:CPF_0969 KID repeat-containing protein.
 
     0.948
Ccel_3282
Phage-related protein-like protein; KEGG: dsy:DSY2176 hypothetical protein.
 
     0.863
Ccel_3285
KEGG: cpf:CPF_0962 hypothetical protein.
 
     0.830
Ccel_3033
Hypothetical protein; KEGG: cpf:CPF_0969 KID repeat-containing protein.
 
     0.781
Ccel_3283
KEGG: cpf:CPF_0964 hypothetical protein.
       0.762
Ccel_3284
Hypothetical protein.
       0.761
Ccel_3297
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
     0.754
Ccel_3291
KEGG: cpf:CPF_0956 putative phage major capsid protein.
 
     0.732
Ccel_3295
Hypothetical protein; KEGG: cpf:CPF_0952 putative phage minor capsid protein.
 
     0.691
Ccel_3292
PFAM: minor structural GP20 protein; KEGG: cno:NT01CX_2174 scaffold protein.
 
     0.688
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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