STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3292PFAM: minor structural GP20 protein; KEGG: cno:NT01CX_2174 scaffold protein. (193 aa)    
Predicted Functional Partners:
Ccel_3285
KEGG: cpf:CPF_0962 hypothetical protein.
 
    0.881
Ccel_3291
KEGG: cpf:CPF_0956 putative phage major capsid protein.
 
     0.867
Ccel_3295
Hypothetical protein; KEGG: cpf:CPF_0952 putative phage minor capsid protein.
 
    0.800
Ccel_3290
KEGG: cpf:CPF_0957 hypothetical protein.
       0.744
Ccel_3282
Phage-related protein-like protein; KEGG: dsy:DSY2176 hypothetical protein.
 
     0.740
Ccel_3286
KEGG: cpf:CPF_0961 hypothetical protein.
       0.733
Ccel_3287
KEGG: cpf:CPF_0960 hypothetical protein.
       0.733
Ccel_3288
KEGG: cpf:CPF_0959 hypothetical protein.
       0.733
Ccel_3289
KEGG: cpf:CPF_0958 hypothetical protein.
       0.733
Ccel_3297
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
    0.693
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.