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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3295Hypothetical protein; KEGG: cpf:CPF_0952 putative phage minor capsid protein. (643 aa)    
Predicted Functional Partners:
Ccel_3297
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
    0.952
Ccel_3298
PFAM: Terminase small subunit; KEGG: bpt:Bpet0975 hypothetical protein.
 
    0.910
Ccel_3285
KEGG: cpf:CPF_0962 hypothetical protein.
 
    0.864
Ccel_3291
KEGG: cpf:CPF_0956 putative phage major capsid protein.
 
     0.843
Ccel_3282
Phage-related protein-like protein; KEGG: dsy:DSY2176 hypothetical protein.
 
     0.819
Ccel_3050
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
    0.800
Ccel_3292
PFAM: minor structural GP20 protein; KEGG: cno:NT01CX_2174 scaffold protein.
 
    0.800
Ccel_3038
KEGG: cpf:CPF_0962 hypothetical protein.
 
    0.795
Ccel_3296
KEGG: cpf:CPF_0951 putative phage minor capsid protein.
       0.786
Ccel_3294
Hypothetical protein.
       0.780
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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