Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3302PFAM: endodeoxyribonuclease RusA; KEGG: spj:MGAS2096_Spy0569 phage protein. (136 aa)    
Predicted Functional Partners:
Ccel_3304
PFAM: Primase 2; KEGG: spj:MGAS2096_Spy0567 ATPase.
 
     0.852
Ccel_3308
Phage protein; KEGG: spj:MGAS2096_Spy0564 phage protein.
 
     0.847
Ccel_3309
Phage protein; KEGG: spj:MGAS2096_Spy0561 phage protein.
 
     0.844
Ccel_3310
PFAM: SMC domain protein; KEGG: spj:MGAS2096_Spy0560 chromosome segregation ATPases.
 
     0.843
Ccel_3307
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spj:MGAS2096_Spy0565 DNA/RNA helicase.
 
     0.841
Ccel_3301
KEGG: cbl:CLK_A0265 phage protein.
       0.645
Ccel_3303
Hypothetical protein.
       0.542
Ccel_3297
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
     0.500
Ccel_3298
PFAM: Terminase small subunit; KEGG: bpt:Bpet0975 hypothetical protein.
 
     0.459
Ccel_3282
Phage-related protein-like protein; KEGG: dsy:DSY2176 hypothetical protein.
 
     0.450
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.