Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3305KEGG: bce:BC1869 phage protein. (382 aa)    
Predicted Functional Partners:
Ccel_3306
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sha:SH2634 hypothetical protein; Belongs to the ParB family.
       0.773
Ccel_3304
PFAM: Primase 2; KEGG: spj:MGAS2096_Spy0567 ATPase.
       0.737
Ccel_3307
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spj:MGAS2096_Spy0565 DNA/RNA helicase.
  
    0.736
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.715
Ccel_3308
Phage protein; KEGG: spj:MGAS2096_Spy0564 phage protein.
       0.714
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.709
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.709
Ccel_3310
PFAM: SMC domain protein; KEGG: spj:MGAS2096_Spy0560 chromosome segregation ATPases.
  
    0.647
Ccel_3309
Phage protein; KEGG: spj:MGAS2096_Spy0561 phage protein.
       0.645
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.528
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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