Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3313Hypothetical protein. (66 aa)    
Predicted Functional Partners:
Ccel_3311
Hypothetical protein.
       0.773
Ccel_3312
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 AbrB family transcriptional regulator.
       0.773
Ccel_3314
Hypothetical protein.
       0.773
Ccel_3309
Phage protein; KEGG: spj:MGAS2096_Spy0561 phage protein.
       0.608
Ccel_3310
PFAM: SMC domain protein; KEGG: spj:MGAS2096_Spy0560 chromosome segregation ATPases.
       0.608
Ccel_3315
KEGG: bat:BAS0421 prophage LambdaBa04, DNA binding protein, putative.
       0.570
Ccel_3307
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spj:MGAS2096_Spy0565 DNA/RNA helicase.
       0.551
Ccel_3308
Phage protein; KEGG: spj:MGAS2096_Spy0564 phage protein.
       0.551
Ccel_3316
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ckl:CKL_1947 hypothetical protein.
       0.526
Ccel_3305
KEGG: bce:BC1869 phage protein.
       0.512
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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