STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3318PFAM: integrase family protein; KEGG: bce:BC2556 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family. (423 aa)    
Predicted Functional Partners:
Ccel_3317
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: bce:BC3704 LexA repressor.
 
  
 0.784
Ccel_3316
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: ckl:CKL_1947 hypothetical protein.
 
    0.607
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
  
     0.456
Ccel_0067
PFAM: integrase family protein; KEGG: cbl:CLK_1309 site-specific recombinase; Belongs to the 'phage' integrase family.
  
  
 0.453
Ccel_2981
PFAM: integrase family protein; KEGG: pth:PTH_2135 integrase; Belongs to the 'phage' integrase family.
  
  
 0.449
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
    0.435
Ccel_3315
KEGG: bat:BAS0421 prophage LambdaBa04, DNA binding protein, putative.
       0.430
Ccel_2525
PFAM: beta-lactamase; KEGG: cpy:Cphy_0866 beta-lactamase.
  
     0.402
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.