Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_3323PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: cpy:Cphy_1440 peptidoglycan binding domain-containing protein. (277 aa)    
Predicted Functional Partners:
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.723
Ccel_2298
PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative.
  
    0.675
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
     0.660
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
 
     0.636
Ccel_0029
Hypothetical protein; KEGG: hau:Haur_4114 multi-sensor signal transduction histidine kinase.
  
     0.633
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
     0.610
Ccel_3322
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cth:Cthe_0458 exodeoxyribonuclease III Xth.
  
    0.586
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.576
Ccel_2212
KEGG: ckl:CKL_2814 hypothetical protein.
  
     0.561
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.521
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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