Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3326KEGG: cac:CAC2342 hypothetical protein. (292 aa)    
Predicted Functional Partners:
Ccel_3235
KEGG: dsy:DSY4338 hypothetical protein.
  
     0.634
Ccel_1210
KEGG: mac:MA1194 hypothetical protein.
  
     0.610
Ccel_1217
PFAM: Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.608
Ccel_1213
PFAM: condensation domain protein; Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.594
Ccel_3343
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cth:Cthe_3176 small acid-soluble spore protein, alpha/beta type.
  
    0.557
Ccel_3327
KEGG: amt:Amet_2448 hypothetical protein.
       0.552
Ccel_2883
PFAM: glycosyl transferase group 1; polysaccharide pyruvyl transferase; KEGG: cth:Cthe_2702 polysaccharide pyruvyl transferase.
  
    0.548
Ccel_1356
KEGG: cth:Cthe_2351 hypothetical protein.
  
     0.541
Ccel_0076
KEGG: gme:Gmet_2951 hypothetical protein.
  
     0.531
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
  
     0.516
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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