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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3330KEGG: cth:Cthe_2069 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Ccel_2046
KEGG: cth:Cthe_0470 hypothetical protein.
  
     0.705
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.674
Ccel_0298
KEGG: cth:Cthe_2709 hypothetical protein.
  
     0.634
Ccel_2916
PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_1870 GCN5-related N-acetyltransferase.
  
     0.634
Ccel_0393
KEGG: tte:TTE1989 hypothetical protein.
  
     0.629
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.599
Ccel_1448
KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
  
     0.585
Ccel_0592
PFAM: regulatory protein MerR; KEGG: cth:Cthe_0804 MerR family transcriptional regulator.
  
     0.579
Ccel_3329
PFAM: helix-hairpin-helix motif; 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; KEGG: cth:Cthe_2068 8-oxoguanine DNA glycosylase-like protein.
       0.553
Ccel_0817
PFAM: protein of unknown function DUF402; KEGG: cth:Cthe_2746 hypothetical protein.
  
     0.528
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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