Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3333PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbt:CLH_2668 glycine betaine/carnitine/choline transport system permease protein opucb. (524 aa)    
Predicted Functional Partners:
Ccel_3334
KEGG: cbt:CLH_2669 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 
 0.999
Ccel_3335
PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbt:CLH_2670 transcriptional regulator, GntR family.
 
   
 0.777
Ccel_0013
KEGG: cth:Cthe_2385 hypothetical protein.
  
  
 0.664
Ccel_0016
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cpy:Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
     
 0.617
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.594
Ccel_1164
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
     
 0.592
Ccel_0248
PFAM: CBS domain containing protein; DHHA2 domain protein; DRTGG domain protein; KEGG: ctc:CTC01649 putative manganese-dependent inorganic pyrophosphatase.
     
 0.586
Ccel_0037
PFAM: regulatory protein MarR; KEGG: cac:CAC0197 MarR family transcriptional regulator.
  
  
 0.551
Ccel_0410
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: iron dependent repressor; KEGG: cbk:CLL_A1371 transcriptional regulator, MarR family.
  
  
 0.551
Ccel_1190
PFAM: regulatory protein MarR; KEGG: cbl:CLK_1389 MarR family transcriptional regulator.
  
  
 0.551
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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