Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Ccel_3335PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbt:CLH_2670 transcriptional regulator, GntR family. (213 aa)    
Predicted Functional Partners:
Ccel_3333
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbt:CLH_2668 glycine betaine/carnitine/choline transport system permease protein opucb.
 
   
 0.777
Ccel_3334
KEGG: cbt:CLH_2669 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 
   
 0.760
Ccel_3336
KEGG: cth:Cthe_2383 hypothetical protein.
       0.440
Ccel_2671
KEGG: dsy:DSY0048 hypothetical protein.
 
   
 0.418
Ccel_3436
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: cth:Cthe_2517 acetolactate synthase, small subunit.
   
    0.411
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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