Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3339KEGG: cth:Cthe_2070 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Ccel_0680
PFAM: regulatory protein DeoR; KEGG: cth:Cthe_0938 fatty acid biosynthesis transcriptional regulator.
  
   
 0.763
Ccel_3340
TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein.
 
     0.601
Ccel_1906
KEGG: cth:Cthe_0835 hypothetical protein.
 
     0.540
Ccel_1911
KEGG: cth:Cthe_0840 hypothetical protein.
 
    0.531
Ccel_0532
KEGG: cth:Cthe_0955 hypothetical protein.
  
     0.525
Ccel_1461
KEGG: cth:Cthe_1262 hypothetical protein.
  
     0.503
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.485
Ccel_0279
PFAM: Protein of unknown function DUF1779; KEGG: cth:Cthe_2614 hypothetical protein.
  
     0.482
Ccel_3341
KEGG: cth:Cthe_2072 hypothetical protein.
 
     0.450
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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