Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3340TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein. (305 aa)    
Predicted Functional Partners:
Ccel_0299
KEGG: cth:Cthe_2710 hypothetical protein.
 
     0.736
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.732
Ccel_1194
PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_3197 PRC-barrel domain-containing protein.
  
     0.713
Ccel_1912
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: cth:Cthe_0841 mutants block sporulation after engulfment.
  
     0.704
Ccel_2873
PFAM: membrane protein of unknown function; KEGG: cth:Cthe_2067 hypothetical protein.
  
    0.703
Ccel_3341
KEGG: cth:Cthe_2072 hypothetical protein.
 
     0.690
Ccel_0522
PFAM: Spore germination protein; KEGG: cth:Cthe_0670 spore germination protein.
  
    0.678
Ccel_2085
KEGG: cth:Cthe_3174 hypothetical protein.
  
    0.674
Ccel_2986
KEGG: cth:Cthe_2681 serine phosphatase; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
     0.651
Ccel_0339
KEGG: cth:Cthe_1784 hypothetical protein.
  
     0.644
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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