STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3341KEGG: cth:Cthe_2072 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Ccel_0688
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0930 radical SAM family protein.
     0.847
Ccel_3329
PFAM: helix-hairpin-helix motif; 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; KEGG: cth:Cthe_2068 8-oxoguanine DNA glycosylase-like protein.
  
     0.694
Ccel_1326
KEGG: cth:Cthe_0165 hypothetical protein.
  
     0.690
Ccel_3340
TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein.
 
     0.687
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.663
Ccel_0041
PFAM: IstB domain protein ATP-binding protein; KEGG: cth:Cthe_2418 DNA replication protein DnaC.
  
     0.662
Ccel_0179
PFAM: NUDIX hydrolase; KEGG: aoe:Clos_1784 NUDIX hydrolase.
  
     0.662
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.620
Ccel_2067
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
  
     0.570
Ccel_0532
KEGG: cth:Cthe_0955 hypothetical protein.
  
     0.554
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.