Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3343PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cth:Cthe_3176 small acid-soluble spore protein, alpha/beta type. (63 aa)    
Predicted Functional Partners:
Ccel_3342
PFAM: protein of unknown function DUF378; KEGG: cth:Cthe_2074 hypothetical protein.
 
    0.575
Ccel_3326
KEGG: cac:CAC2342 hypothetical protein.
  
    0.557
Ccel_3344
PFAM: protein of unknown function UPF0118; KEGG: bwe:BcerKBAB4_1797 hypothetical protein.
       0.453
Ccel_3083
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein.
  
     0.447
Ccel_1465
PFAM: heat shock protein DnaJ domain protein; KEGG: cno:NT01CX_1376 molecular chaperone.
  
     0.440
Ccel_0017
TIGRFAM: spore coat protein, CotS family; KEGG: cth:Cthe_2398 putative spore coat protein.
  
    0.438
Ccel_1444
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cth:Cthe_0216 small acid-soluble spore protein, alpha/beta type.
  
     0.430
Ccel_2245
KEGG: cth:Cthe_0149 HPrNtr domain-containing protein.
  
     0.400
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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