STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3344PFAM: protein of unknown function UPF0118; KEGG: bwe:BcerKBAB4_1797 hypothetical protein. (343 aa)    
Predicted Functional Partners:
Ccel_3345
KEGG: trq:TRQ2_0769 hypothetical protein.
       0.591
Ccel_3346
KEGG: cth:Cthe_2247 regulatory protein, MerR.
       0.512
Ccel_1960
TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: cpy:Cphy_0609 hypothetical protein.
  
   0.473
Ccel_3343
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cth:Cthe_3176 small acid-soluble spore protein, alpha/beta type.
       0.453
Ccel_3347
Hypothetical protein.
       0.423
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.