Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3349KEGG: ckl:CKL_2427 hypothetical protein. (368 aa)    
Predicted Functional Partners:
Ccel_3399
KEGG: cth:Cthe_2348 Ig-related protein.
  
   
 0.695
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
 
 0.690
Ccel_3210
PFAM: lipolytic protein G-D-S-L family; KEGG: lin:lin0634 hypothetical protein.
  
 
   0.681
Ccel_3398
KEGG: cth:Cthe_2348 Ig-related protein.
  
   
 0.650
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
     0.598
Ccel_3350
PFAM: extracellular solute-binding protein family 1; KEGG: esi:Exig_0586 extracellular solute-binding protein.
       0.574
Ccel_1519
KEGG: predicted protein.
  
  
 0.572
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
     0.561
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
   
 0.558
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
  
 0.553
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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