Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3350PFAM: extracellular solute-binding protein family 1; KEGG: esi:Exig_0586 extracellular solute-binding protein. (461 aa)    
Predicted Functional Partners:
Ccel_0996
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_1780 sugar ABC transporter sugar-binding protein.
  
     0.734
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 
 0.696
Ccel_2996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llc:LACR_1477 ABC-type sugar transport system, permease component.
 
 
 0.659
Ccel_1254
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1066 hypothetical protein.
 
 
 0.628
Ccel_0152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3208 binding-protein-dependent transport systems inner membrane component.
 
 
 0.614
Ccel_3245
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tle:Tlet_1426 binding-protein-dependent transport systems inner membrane component.
 
 
 0.612
Ccel_0201
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease.
 
 
 0.604
Ccel_2995
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6229 sugar transport system permease protein.
 
 
 0.603
Ccel_1015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3208 hypothetical protein.
 
 
 0.583
Ccel_1134
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4679 binding-protein-dependent transport systems inner membrane component.
 
 
 0.583
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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