Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Ccel_3352PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cth:Cthe_1509 hypothetical protein. (342 aa)    
Predicted Functional Partners:
Ccel_3353
KEGG: cth:Cthe_2514 hypothetical protein.
       0.651
Ccel_3354
PFAM: protein of unknown function DUF951; KEGG: cth:Cthe_2512 hypothetical protein.
       0.638
Ccel_3355
PFAM: MscS Mechanosensitive ion channel; KEGG: cth:Cthe_2511 MscS mechanosensitive ion channel.
       0.621
Ccel_3356
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cth:Cthe_2162 peptidase C26.
       0.475
Ccel_0847
KEGG: dsy:DSY0716 hypothetical protein.
  
     0.401
Ccel_3357
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein.
     
 0.400
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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