STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3359KEGG: bay:RBAM_013480 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.693
Ccel_2510
PFAM: protein of unknown function DUF201; KEGG: saq:Sare_0485 hypothetical protein.
  
     0.634
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
     0.620
Ccel_2515
KEGG: plu:plu2412 hypothetical protein.
  
     0.614
Ccel_1252
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_1773 peripheral protein.
  
     0.604
Ccel_1251
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: hypothetical protein.
  
     0.601
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
  
     0.590
Ccel_3398
KEGG: cth:Cthe_2348 Ig-related protein.
  
     0.550
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
     0.549
Ccel_0213
KEGG: csc:Csac_0293 hypothetical protein.
  
     0.541
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.