STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3395KEGG: cno:NT01CX_1552 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Ccel_3396
Outer membrane protein-like protein; KEGG: cth:Cthe_1765 hypothetical protein.
       0.782
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
 
 0.746
Ccel_0468
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.737
Ccel_2264
Hypothetical protein; KEGG: cbl:CLK_3683 putative bacteriocin ABC transporter, bacteriocin-binding protein.
  
 
 0.737
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
       0.510
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
  
 
 0.495
Ccel_3394
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_2333 two component transcriptional regulator.
  
 
 0.495
Ccel_2681
KEGG: amt:Amet_4173 hypothetical protein.
  
 
 0.478
Ccel_2265
KEGG: amt:Amet_1032 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase.
  
  
 0.408
Ccel_0429
PFAM: PKD domain containing protein; cellulosome protein dockerin type I; KEGG: cth:Cthe_0624 glycoside hydrolase family protein.
    
 
 0.406
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.