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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3404KEGG: chy:CHY_2613 hypothetical protein. (534 aa)    
Predicted Functional Partners:
Ccel_1519
KEGG: predicted protein.
  
 
   0.654
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
 
   0.622
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
 
   0.611
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
 
 
   0.556
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
     0.536
Ccel_3403
Hypothetical protein.
       0.532
Ccel_1491
PFAM: type 3a cellulose-binding domain protein; Hyalin; KEGG: LOC587453; similar to hyalin.
  
     0.529
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
 
 0.527
Ccel_0948
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3240 extracellular solute-binding protein.
  
     0.505
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
    0.494
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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