Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_3418KEGG: ckl:CKL_3399 hypothetical protein. (523 aa)    
Predicted Functional Partners:
Ccel_3416
KEGG: cbt:CLH_3078 hypothetical protein.
 
     0.925
Ccel_3417
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: gtn:GTNG_0162 DNA-binding protein.
       0.737
Ccel_3419
Hypothetical protein.
       0.718
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
 
  
 0.644
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.619
Ccel_1519
KEGG: predicted protein.
  
     0.616
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.611
Ccel_1176
KEGG: cdf:CD1088 hypothetical protein.
  
     0.582
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
 
 0.579
Ccel_1181
Hypothetical protein; KEGG: cbl:CLK_2533 ABC transporter, permease protein.
  
     0.578
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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