Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3467TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cbt:CLH_3015 L-ribulose-5-phosphate 4-epimerase. (229 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cdf:CD3065 xylulose kinase.
 
 
 0.953
Ccel_3468
PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY.
 
  
 0.948
Ccel_1006
PFAM: carbohydrate kinase FGGY; KEGG: mta:Moth_2025 xylulokinase; Belongs to the FGGY kinase family.
  
 
 0.945
Ccel_1537
PFAM: ribulose-phosphate 3-epimerase; KEGG: cth:Cthe_0576 ribulose-5-phosphate 3-epimerase.
  
 
 0.941
Ccel_1033
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.925
Ccel_3470
PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: bld:BLi03256 hypothetical protein.
 
   
 0.691
Ccel_2486
3-dehydroquinate synthase; PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cbe:Cbei_4092 3-dehydroquinate synthase.
  
  
 0.682
Ccel_3469
KEGG: csc:Csac_0877 L-fucose isomerase-like protein.
 
  
 0.658
Ccel_3198
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cdf:CD2966 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.588
Ccel_2474
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: ckl:CKL_1762 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
  
  
 0.584
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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