Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_3469KEGG: csc:Csac_0877 L-fucose isomerase-like protein. (493 aa)    
Predicted Functional Partners:
Ccel_3468
PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY.
 
  
 0.780
Ccel_3470
PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; KEGG: bld:BLi03256 hypothetical protein.
 
   
 0.681
Ccel_3467
TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cbt:CLH_3015 L-ribulose-5-phosphate 4-epimerase.
 
  
 0.658
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: cdf:CD3065 xylulose kinase.
 
  
 0.464
Ccel_1606
Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
   
    0.432
Ccel_3330
KEGG: cth:Cthe_2069 hypothetical protein.
  
     0.420
Ccel_0298
KEGG: cth:Cthe_2709 hypothetical protein.
  
     0.404
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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