STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3474TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dps:DP1668 desulfoferrodoxin. (126 aa)    
Predicted Functional Partners:
Ccel_0043
Ferritin Dps family protein; Iron-storage protein.
 
  
 0.840
Ccel_3357
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein.
 
  
 0.803
Ccel_0321
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: drm:Dred_2942 hypothetical protein.
  
 0.762
Ccel_1869
PFAM: Rubrerythrin; KEGG: cbk:CLL_A1055 rubrerythrin.
 
  
 0.592
sfsA
PFAM: sugar fermentation stimulation protein; KEGG: cbe:Cbei_0495 sugar fermentation stimulation protein A; Belongs to the SfsA family.
       0.538
Ccel_0893
PFAM: Rubrerythrin; KEGG: ckl:CKL_2032 Rbr1.
 
  
 0.524
Ccel_3472
PFAM: protein of unknown function UPF0047; KEGG: cac:CAC0907 hypothetical protein.
       0.517
Ccel_2211
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cth:Cthe_0360 thioredoxin; Belongs to the thioredoxin family.
  
   
 0.418
Ccel_3475
KEGG: cth:Cthe_2436 hypothetical protein.
       0.404
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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