STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cph2_1Phytochrome-like protein cph2. (1026 aa)    
Predicted Functional Partners:
pleD_2
Response regulator PleD.
 
0.971
cph2_3
Phytochrome-like protein cph2.
 
0.971
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
 
0.970
gmr_7
Cyclic di-GMP phosphodiesterase Gmr.
 
0.963
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
 
0.956
cheV
Chemotaxis protein CheV.
  
 
 0.942
rpfG_4
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
  
 0.910
pleD_1
Response regulator PleD.
 
0.909
ycdT_2
Putative diguanylate cyclase YcdT.
 
0.909
adrA
Putative diguanylate cyclase AdrA.
 
 
0.905
Your Current Organism:
Andreesenia angusta
NCBI taxonomy Id: 39480
Other names: A. angusta, ATCC 43737, Eubacterium angustum, strain MK-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.