cbiM protein (Andreesenia angusta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cbiM

Cobalt transport protein CbiM precursor; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (245 aa)

Predicted Functional Partners:

EUAN_03190

0.997

cbiN

0.995

cbiD

0.957

EUAN_03110

0.944

cbiC

0.932

cbiE

0.927

cbiL

0.920

nasF

0.906

cobK

0.906

cbiT

0.905

Your Current Organism:

Andreesenia angusta

NCBI taxonomy Id: 39480
Other names: A. angusta, ATCC 43737, Eubacterium angustum, strain MK-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUAN_03110	EUAN_03190	EUAN_03110	EUAN_03190	Cobalamin biosynthesis protein CbiG.	Cobalt transport protein.	0.894
EUAN_03110	cbiC	EUAN_03110	EUAN_03170	Cobalamin biosynthesis protein CbiG.	cobalt-precorrin-8X methylmutase.	0.992
EUAN_03110	cbiD	EUAN_03110	EUAN_03160	Cobalamin biosynthesis protein CbiG.	cobalt-precorrin-6A synthase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.	0.998
EUAN_03110	cbiE	EUAN_03110	EUAN_03150	Cobalamin biosynthesis protein CbiG.	Putative cobalt-precorrin-6Y C(5)-methyltransferase.	0.984
EUAN_03110	cbiL	EUAN_03110	EUAN_03130	Cobalamin biosynthesis protein CbiG.	Cobalt-precorrin-2 C(20)-methyltransferase; Belongs to the precorrin methyltransferase family.	0.997
EUAN_03110	cbiM	EUAN_03110	EUAN_03210	Cobalamin biosynthesis protein CbiG.	Cobalt transport protein CbiM precursor; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.944
EUAN_03110	cbiN	EUAN_03110	EUAN_03200	Cobalamin biosynthesis protein CbiG.	Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.930
EUAN_03110	cbiT	EUAN_03110	EUAN_03140	Cobalamin biosynthesis protein CbiG.	Putative cobalt-precorrin-6Y C(15)-methyltransferase.	0.978
EUAN_03110	cobK	EUAN_03110	EUAN_03090	Cobalamin biosynthesis protein CbiG.	precorrin-6A reductase.	0.995
EUAN_03110	nasF	EUAN_03110	EUAN_03050	Cobalamin biosynthesis protein CbiG.	uroporphyrinogen-III C-methyltransferase.	0.984
EUAN_03190	EUAN_03110	EUAN_03190	EUAN_03110	Cobalt transport protein.	Cobalamin biosynthesis protein CbiG.	0.894
EUAN_03190	cbiC	EUAN_03190	EUAN_03170	Cobalt transport protein.	cobalt-precorrin-8X methylmutase.	0.901
EUAN_03190	cbiD	EUAN_03190	EUAN_03160	Cobalt transport protein.	cobalt-precorrin-6A synthase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.	0.938
EUAN_03190	cbiE	EUAN_03190	EUAN_03150	Cobalt transport protein.	Putative cobalt-precorrin-6Y C(5)-methyltransferase.	0.869
EUAN_03190	cbiL	EUAN_03190	EUAN_03130	Cobalt transport protein.	Cobalt-precorrin-2 C(20)-methyltransferase; Belongs to the precorrin methyltransferase family.	0.882
EUAN_03190	cbiM	EUAN_03190	EUAN_03210	Cobalt transport protein.	Cobalt transport protein CbiM precursor; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.997
EUAN_03190	cbiN	EUAN_03190	EUAN_03200	Cobalt transport protein.	Cobalt transport protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.994
EUAN_03190	cbiT	EUAN_03190	EUAN_03140	Cobalt transport protein.	Putative cobalt-precorrin-6Y C(15)-methyltransferase.	0.895
EUAN_03190	cobK	EUAN_03190	EUAN_03090	Cobalt transport protein.	precorrin-6A reductase.	0.865
EUAN_03190	nasF	EUAN_03190	EUAN_03050	Cobalt transport protein.	uroporphyrinogen-III C-methyltransferase.	0.874